Martin-Luther-Universität Halle-Wittenberg

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Publikationen

2014

Grafahrend-Belau E, Junker A, Schreiber F, Junker BH. 2014. Flux Balance Analysis as an alternative method to estimate fluxes without labeling. In: Dieuaide-Noubhani M & Alonso A (Eds.): Plant Metabolic Flux Analysis. Methods in Molecular Biology, 1090: 281-299.

Hüge J, Götze J, Junker BH, Kopka J. 2014. Quantification of stable isotope label in metabolites via mass spectrometry. In: S. Robert & G. Hicks (Eds.): Plant Chemical Biology. Methods in Molecular Biology, 1056: 213-223.

Junker BH. 2014. Flux analysis in plant metabolic networks: increasing throughput and coverage. Current Opinion in Biotechnology, 26C: 183-188.

Kempa S, Junker BH. 2013. Non-stationary metabolic flux analysis. In: W. Dubitzky, O. Wolkenhauer, K.-H. Cho & H. Yokota (Eds.): Encyclopedia of Systems Biology. Springer, Netherlands.

Lotz K, Hartmann A, Grafahrend-Belau E, Schreiber F, Junker BH. 2014. Flux balance analysis, elementary flux modes and their applications to plant metabolism. In: G. Sriram (Ed.), Plant Metabolism: Methods and Protocols. Methods in Molecular Biology, 1083: 231-252.

Poskar CH, Huege J, Krach C, Shachar-Hill Y, Junker BH. 2014. High-throughput data pipelines for metabolic flux analysis in plants. In: Dieuaide-Noubhani, M. & A. Alonso (Eds.): Plant Metabolic Flux Analysis. Methods in Molecular Biology, 1090: 223-246.

2013

Baker SM, Poskar CH, Schreiber F, Junker BH. 2013. An improved constraint filtering technique for inferring hidden states and parameters of a biological model. Bioinformatics, 29: 1052-1059.

Franke M, Hüge J, Tablack P, Junker BH. 2013. Messung von intrazellulären Stoffflüssen in Pflanzen. Biospektrum, 19: 690-693.

Grafahrend-Belau E, Junker A, Eschenröder A, Müller J, Schreiber F, Junker BH. 2013. Multiscale metabolic modeling: dynamic flux balance analysis on a whole-plant scale. Plant Physiology. 163: 637-647.

2012

Grafahrend-Belau E, Junker BH, Schreiber F. 2012. Plant metabolic pathways. Database and pipeline for stoichiometric analysis. In: G.K. Agrawal & R. Rakwal (Eds.), Seed development: omics technologies toward improvement of seed quality and crop yield, Springer, Netherlands, pp 345-366.

Huege J, Poskar CH, Franke M, Junker BH. 2012. Towards high throughput metabolic flux analysis in plants. Molecular BioSystems, 8: 2466-2468.

Junker A, Junker BH. 2012. Synthetic gene networks in plant systems. In: W. Weber, M. Fussenegger (Eds.), Synthetic gene networks. Methods in Molecular Biology, 813: 343-358.

Krach C, Grafahrend-Belau E, Poskar H, Schallau K, Schreiber F, Junker BH. 2012. Using systems approaches to analyze metabolic networks involved in storage reserve synthesis in developing seeds. In: G.K. Agrawal & R. Rakwal (Eds.), Seed development: omics technologies toward improvement of seed quality and crop yield, Springer, Netherlands, pp 387-406.

Poskar CH, Huege J, Krach C, Franke M, Shachar-Hill Y, Junker BH. 2012. iMS2Flux - a high-throughput processing tool for stable isotope labeled mass spectrometric data used for metabolic flux analysis. BMC Bioinformatics, 13: e295.

Rohn H, Hartmann A, Junker BH, Schreiber F. 2012. FluxMap: a Vanted Add-on for the visual exploration of flux distributions in biological networks. BMC Systems Biology, 6: e33.

Schreiber F, Colmsee C, Czauderna T, Grafahrend-Belau E, Hartmann A, Junker A, Junker BH, Klapperstück M, Scholz U, Weise S. 2012. MetaCrop 2.0: managing and exploring information about crop plant metabolism. Nucleic Acids Research, 40: D1173-1177.

2011

Baker SM, Poskar H, Junker BH. 2011. Unscented Kalman Filter with parameter identifiability analysis for the estimation of multiple parameters in kinetic models. EURASIP Journal on Bioinformatics and Systems Biology, e7.

Junker BH. 2011. Steady-state 13C metabolic flux analysis in plants (in German). Biospektrum, 17: 230-232.

Krach C, Junker A, Rohn H, Schreiber F, Junker BH. Flux visualization using Vanted/FluxMap. In: Krömer JO, Nielsen LK & Blank LM (Eds.): Metabolic Flux Analysis: Methods and Protocols. Methods in Molecular Biology, in press.

Weise S, Chen J, Junker BH, Klapperstück M, Lange M, Schreiber F, Scholz U. 2011. The MetaCrop Information System for Supporting Systems Biological Research on Crop Plants. Information Technology, 53: 234-240 (in German).

2010

Baker SM, Schallau K, Junker BH. 2010. Comparison of different algorithms for simultaneous estimation of multiple parameters in kinetic metabolic models. Journal of Integrative Bioinformatics, 7: e133.

Baker SM, Junker BH. 2010. Adaptive Unscented Kalman Filter for Estimation of Parameters in Kinetic Metabolic Models. In: L. Chen, X.S. Zhang, B. Shen, L.Y. Wu, Y. Wang (Eds.), Proceedings of the Forth International Conference on Computational Systems Biology. Lecture Notes in Operations Research 13: 185-186.

Baker SM, Poskar CH, Junker BH. 2010. Unscented Kalman filter for estimation of multiple parameters in kinetic models. Proceedings of the 7th International Workshop on Computational Systems Biology (WCSB), Luxembourg, p19-22.

Koschützki D, Junker BH, Schwender J, Schreiber F. 2010. Structural analysis of metabolic networks requires flux information. Journal of Theoretical Biology, 265: 261-269.

Schallau K, Junker BH. 2010. Simulating plant metabolic pathways with enzyme-kinetic models. Plant Physiology, 152: 1763-1771.

Schuster S, Junker BH. 2010. Topological analysis of metabolic and regulatory networks. In: I. Koch, W. Reisig, F. Schreiber (eds.) Modeling in Systems Biology: The Petri Net Approach. Springer, p209-224.

Liiving T, Baker SM, Junker BH. 2010. Biochemical Fundamentals. In: I Koch, W Reisig, F Schreiber (eds.) Modeling in Systems Biology: The Petri Net Approach. Springer, p19-36.

2009

Grafahrend-Belau E, Junker BH, Klukas C, Koschützki D, Schreiber F, Schwöbbermeyer H. 2009. Topology of plant metabolic networks. In: J Schwender (ed.) Plant Metabolic Networks. Springer, 173-209.

Grafahrend-Belau E, Schreiber F, Koschützki D, Junker BH. 2009. Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism. Plant Physiology, 149: 585-598.

Grafahrend-Belau E, Klukas C, Junker BH, Schreiber F. 2009. Dynamic visualization of constraint-based metabolic models. Bioinformatics 25: 2755-2757.2010

Steuer R, Junker BH. 2009. Computational models of metabolism: stability and regulation in metabolic networks. Advances in Chemical Physics, 142: 105-251.

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